How to connect Stripe to Shopify Flow
Stripe is a payment platform. It sends a webhook for every payment, refund, dispute, subscription change and invoice event in your account. Workflow Webhooks turns that call into a Shopify Flow trigger, so your store can react to it: tag a customer, add an order note, send an internal email, update a metafield - anything Shopify Flow can do.
This guide sets up the whole path - Stripe sends, Workflow Webhooks receives and verifies, Shopify Flow acts - with Stripe's HMAC signature checked on every request, so nothing but Stripe can start your workflow.
What you can build
- Tag a Shopify customer who paid through a Stripe checkout or payment link, so your segments stay in sync.
- Add an order note and alert your team the moment a dispute is opened.
- Email staff when a subscription payment fails, so someone can reach out before the customer churns.
Typical events to send: payment_intent.succeeded, charge.refunded, charge.dispute.created, customer.subscription.deleted, invoice.payment_failed.
Before you begin
- Workflow Webhooks installed on your Shopify store.
- Shopify Flow installed, which is free from the Shopify App Store.
- An account on Stripe with permission to create webhooks.
Step 1 - Create the webhook in Workflow Webhooks
- Open Workflow Webhooks -> Webhooks -> Create webhook and give it a name you will recognise in Flow, such as
Stripe events. - Under Authentication, choose HMAC.
- Under Signature provider, pick Stripe. The app fills in the header, algorithm, signed payload and replay window for you - there is nothing else to configure.
- Leave the secret empty for now and Save. Copy the webhook URL shown on the page.
See Authentication for the other authentication modes, and Payload mapping and Flow variables for choosing which fields reach Flow.
Step 2 - Add the endpoint in Stripe
In the Stripe Dashboard, open Developers -> Webhooks, add an endpoint with the URL you copied, and pick the events you want to send.
How to find your Stripe signing secret
Webhook signing secret (whsec_...) from the Stripe Dashboard -> Developers -> Webhooks.
Stripe's own documentation on webhook signatures has the exact wording and screenshots for your account.
Paste that secret into the webhook's Secret field in Workflow Webhooks and save. From that moment every Stripe delivery is verified before it reaches Flow.
What this checks
| What | Value |
|---|---|
| Signature header | Stripe-Signature |
| Where the signature sits | In the v1 value of that header, which carries key=value pairs separated by commas |
| What is signed | {timestamp}.{body} |
| Signature | HMAC-SHA256, hex encoded |
| Timestamp | The t value of the signature header, as Unix seconds |
| Replay protection | Requests whose signed timestamp is more than 5 minutes away from now are rejected |
| The secret | Used as plain text. Paste it exactly as the sender shows it |
In the signed payload, {body} is the raw request body, byte for byte, and {timestamp} is the timestamp above.
A request that fails any of these is rejected with 401, is recorded in History and troubleshooting, and never starts a workflow.
Step 3 - Build the Shopify Flow workflow
- In Shopify Flow, create a workflow and choose the Workflow Webhooks trigger.
- Press Record events, then send a test event from Stripe (or use Send test in Workflow Webhooks) so Flow learns the shape of your data.
- Every webhook you own fires the same Flow trigger, so add a first condition on the webhook id to keep this workflow to Stripe only. The id is shown on the webhook page.
- Add your actions - tag a customer, add a note, send an internal email, update a metafield.
Step 4 - Test it end to end
Trigger a real event in Stripe. In Workflow Webhooks -> History you should see the invocation with status Success. If the signature was wrong you get a failed entry with the reason instead, and Verifying signed webhooks explains the signature tester that shows you exactly which step failed.
The signature does not match▾
In this order: the secret (the most common cause - an extra space, or a key from the wrong environment), whether the sender is using a different endpoint's secret, and whether anything between Stripe and the app rewrites the body. Signatures cover the raw bytes, so a proxy that re-formats JSON breaks them. The signature tester on the webhook page shows the exact text that was signed.
I get 401 on every request▾
Check that the webhook's authentication is set to HMAC with the Stripe provider selected, that the secret is filled in, and that Stripe is posting to the URL exactly as the app shows it, including the code at the end.
Nothing appears in History▾
The request never arrived. Re-check the URL in Stripe, and look at Stripe's own delivery log for the response it got. A 404 means a wrong or deleted webhook, a 429 means you are over your plan's invocation limit - see Plans and usage.
The workflow runs for the wrong events▾
Every webhook in your store fires the same Flow trigger. Add a condition on the webhook id as the first step of the workflow, or narrow the events you send from Stripe.
Requests fail with "timestamp outside tolerance"▾
Stripe signs a timestamp and the app rejects anything more than 5 minutes old. This is normally a clock problem on the sending side, or a delivery that Stripe retried much later with the original timestamp. Retries from the same original request cannot pass; ask Stripe to send a fresh event.
Related
- Verifying signed webhooks - every provider we verify, and how to describe one we do not.
- Payload mapping and Flow variables - getting the right fields out of the payload and into Flow.
- Duplicate delivery protection - what happens when Stripe retries a delivery.
- History and troubleshooting - the log of every request, with replay.

